PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G171600.1
Common NameB456_009G171600, LOC105770937
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 447aa    MW: 50089.7 Da    PI: 9.6824
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G171600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.75.6e-08437236
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                         rW t+E++ll  av ++G+++W+++a+++  +Rt
  Gorai.009G171600.1  4 ERWGTWEELLLGGAVLRHGTRDWNLVASELR-TRT 37
                        69*****************************.**9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002492.1E-6437IPR001005SANT/Myb domain
CDDcd001670.00297552No hitNo description
SuperFamilySSF473707.33E-18247359IPR001487Bromodomain
SMARTSM002971.0E-12250357IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.8E-15250359IPR001487Bromodomain
CDDcd043698.80E-15254348No hitNo description
PfamPF004391.1E-11263341IPR001487Bromodomain
PROSITE profilePS500149.656268338IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MGTERWGTWE ELLLGGAVLR HGTRDWNLVA SELRTRTVAP FGFTPEICKA KYEDLQQRYS  60
GCKAWFEELR KQRMAELRQA LEKTEDSIGS LESKVEGLKA EKRDDSQVIY GSSQTESAIP  120
CLKSEGIEFS SKDKCKDGLS AGSFTQEAET TWPPHCLIPV AVPAEVMDVK QGASLTSERE  180
QISSIDKLFG TFCGGRFLSI RKRRGKRKRK DCSKNAKEGS VGESEFLDPA DVANASWCKE  240
TSASSEDQNR GSSSEVIDDI MGIFSSIAKN DCMSVFRRRL DSQERGRYKK MIRQHRDFDT  300
IRSRIASKSI MSVKELFRDM LLVANNALVF YSKNTREYKS ALLLRHIVTA TLQQHLKEYR  360
SKVPLHKPLA KPRSIHPSHH ERLGNTTNNE TPVVVNSRGC KNTSNAESPP SMESSTFSAQ  420
PRNAVCGYAI QKSESPTKGR KRARAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202210RRGKRKRKD
2438444GRKRARA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447765.10.0PREDICTED: uncharacterized protein LOC105770937 isoform X1
TrEMBLA0A0D2S2U60.0A0A0D2S2U6_G
STRINGGLYMA13G31800.11e-144(Glycine max)
STRINGGLYMA15G07500.11e-144(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7607915
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-30DNA-binding bromodomain-containing protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]